Closes the v0.1.0 KNOWN LIMIT where resume was an exit-2 stub. Builds on
v0.2 PR #2a's LangGraph wiring + the existing DB phase-state machine +
sweep_orphan_runs — no Temporal (per DR-3).
Highlights
- `WorkflowEngine.resume(run_id)` (new async method):
- Loads RunRow, rejects terminal states with
MyDeepAgentError("run_already_terminal").
- Reloads worktree_root from `RunRow.worktree_root`, template via
`_reload_template` (WorkflowTemplateRow JOIN + model_validate), and
bindings via `_reload_bindings` (run_bindings ⨝ agent_personas).
- **Does NOT call `bind_personas` again** — locks in the original
binding so consent / persona-pool changes since the original run
don't silently shift role assignment.
- `_execute_run` (extracted shared phase loop): `run()` and `resume()`
both dispatch through it. Skips already-completed phases (emits
`phase.skipped` event) and re-executes the rest.
- 4 new private helpers on WorkflowEngine: `_get_run_or_raise`,
`_reload_template`, `_reload_bindings`, `_get_completed_phase_keys`.
- `RunEventType.RUN_RESUMED` and `PHASE_SKIPPED` are now actually
emitted (the enum members existed already).
- `cli/runs.py _runs_resume_async`: stub → real impl. Validates the run
exists + non-terminal, loads seed personas + artifact schemas from
`docs/schemas/`, constructs WorkflowEngine with an
"abort-on-new-approval" callback (resume should not silently re-prompt
the user — original gates already passed; a new gate means the
workflow has changed). Calls engine.resume(UUID(id)), prints final
state + report. Catches MyDeepAgentError and exits 1 with red error.
Tests
- `tests/integration/test_resume.py` (new, 5 scenarios):
1. 2-phase mock workflow: phase 1 succeeds, phase 2 fails first time,
row flipped back to executing → resume → phase 2 completes.
Asserts `phase.skipped` event for phase 1, `run.resumed` event,
and exactly 1 mock invocation for phase 2 on resume.
2. Terminal run → `MyDeepAgentError(code="run_already_terminal")`.
3. Unknown run id → `MyDeepAgentError(code="run_not_found")`.
4. RunBindingRow rows missing → `MyDeepAgentError(code="run_metadata_missing")`.
5. Corrupt `workflow_templates.definition` →
`MyDeepAgentError(code="template_load_failed")`.
Mock pattern matches existing test_engine.py: patch
`my_deepagent.engine.build_agent` to return a fake agent that writes
the expected artifact and drives the watcher middleware.
Gates
- ruff check + ruff format --check + mypy --strict: PASS (103 source files)
- pytest non-E2E: 587 PASS (12.69 s) — +5 from new resume tests
- pytest E2E real OpenRouter on Postgres: PASS 78.52 s (baseline 71–122 s;
within DR-3 acceptance threshold ≤+20%)
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
257 lines
19 KiB
Markdown
257 lines
19 KiB
Markdown
# Changelog
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## [Unreleased]
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### Added
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- **v0.2 PR #2b — `mydeepagent runs resume <id>` real implementation**.
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Closes the v0.1.0 KNOWN LIMIT where resume was an exit-2 stub. Reuses
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v0.2 PR #2a's LangGraph wiring + sweep_orphan_runs's DB state machine,
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no Temporal (DR-3).
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- `src/my_deepagent/engine.py`:
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- New `WorkflowEngine.resume(run_id)` async method. Loads `RunRow`,
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rejects terminal states with `MyDeepAgentError.human_required("run_already_terminal")`,
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reloads `worktree_root` + `WorkflowTemplate` (via `_reload_template`) +
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bindings (via `_reload_bindings`) from DB. Does **not** call
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`bind_personas` again — locks in the original binding so consent /
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pool changes don't silently shift roles.
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- New `_execute_run` helper (shared phase loop) extracted from `run()`.
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Skips already-`completed` phases (emits `phase.skipped` event) and
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re-executes the rest. Both `run` (new) and `resume` dispatch through
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it.
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- New helpers: `_get_run_or_raise`, `_reload_template`,
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`_reload_bindings` (rebuilds `{role_id: Binding}` from
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`run_bindings` ⨝ `agent_personas`; corrupt persona rows are logged
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and skipped, surfacing as `run_metadata_missing` if no bindings remain),
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`_get_completed_phase_keys`.
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- New `RunEventType.RUN_RESUMED` and `RunEventType.PHASE_SKIPPED` are
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now actually emitted (the enum members existed already from v0.1.0).
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- `src/my_deepagent/cli/runs.py` `_runs_resume_async`: stub → real impl.
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Validates run exists + non-terminal, loads seed personas + artifact
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schemas (`docs/schemas/`), constructs `WorkflowEngine` with a
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"abort-on-new-approval" callback, calls `engine.resume(UUID(id))`,
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prints final state + report path. Catches `MyDeepAgentError` and prints
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a red error with exit 1.
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- `tests/integration/test_resume.py` (new, 5 scenarios):
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1. 2-phase workflow: phase 1 succeeds, phase 2 fails → flip run row
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back to executing → resume → phase 2 completes; assert phase 1 was
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skipped (`phase.skipped` event present) and `run.resumed` event emitted.
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2. Terminal run → `resume()` raises `MyDeepAgentError(code="run_already_terminal")`.
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3. Unknown run id → raises `MyDeepAgentError(code="run_not_found")`.
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4. RunBindingRow rows missing → raises `MyDeepAgentError(code="run_metadata_missing")`.
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5. workflow_templates.definition is malformed → raises `MyDeepAgentError(code="template_load_failed")`.
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- E2E real OpenRouter regression PASS 78.52 s (baseline 71–122 s);
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within DR-3 acceptance threshold (+20%).
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- **v0.2 PR #2a — LangGraph `AsyncPostgresSaver` engine wiring** (foundation
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for `runs resume`). v0.2 PR #1 added the dependency; this commit actually
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uses it.
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- `src/my_deepagent/engine.py`:
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- `WorkflowEngine.__init__` accepts `checkpointer_url: str | None` (defaults
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to `config.database_url`).
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- New `_maybe_open_saver` async context: opens `get_checkpointer_ctx` for
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`postgresql{,+asyncpg,+psycopg}://` URLs, yields `None` for `sqlite+aiosqlite://`
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(test affordance — production always Postgres per DR-2 / DR-3).
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- `WorkflowEngine.run()` opens the saver **once per run** and shares it
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across all phases via `self._saver` — opening per-phase would re-connect
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5+ times for no isolation gain (checkpoints are keyed by `thread_id`, not
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saver instance).
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- `_invoke_agent_until_artifact` forwards `checkpointer=self._saver` to
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`build_agent` and passes `config={"configurable": {"thread_id": f"run:<uuid>:phase:<uuid>"}}`
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to `agent.ainvoke`. Same `thread_id` format already used by
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`LlmCallRow.thread_id` (cost ledger), so one key namespace covers both.
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- `tests/integration/test_engine_checkpointer_wiring.py` (new):
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1. **Contract 1 — engine wiring**: `build_agent` receives a non-None saver;
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`agent.ainvoke` receives `config.configurable.thread_id` in the
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expected `run:<uuid>:phase:<uuid>` format.
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2. **Contract 2 — LangGraph thread isolation**: two distinct `thread_id`s
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write independent rows in the auto-created `checkpoints` table; aput /
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aget round-trip preserves per-thread identity (sanity check against
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future deepagents wrap regressions).
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- `tests/integration/test_engine.py` — 5 mock-agent tests: fake `_ainvoke`
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signature widened with `**_kwargs` to accept the new `config=` arg.
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- E2E real OpenRouter regression PASS 75.99 s (baseline 71–122 s); within
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DR-3 acceptance threshold (+20%).
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- **v0.2 PR #1 — Postgres migration**: production backing store switched from
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SQLite to PostgreSQL 16 ahead of M8-Py (FastAPI) per DR-2.
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- `pyproject.toml`: `asyncpg>=0.30` + `psycopg[binary]>=3.2` +
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`langgraph-checkpoint-postgres>=2.0.0` added to runtime; `aiosqlite>=0.20`
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moved to `[dependency-groups].dev` (test-only); `langgraph-checkpoint-sqlite`
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removed.
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- `src/my_deepagent/persistence/db.py`: dialect-aware connect listener —
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SQLite still gets `WAL` + `busy_timeout=5000` + `foreign_keys=ON`, Postgres
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gets `SET TIME ZONE 'UTC'`. New `Database.dialect_name` property + `drop_schema`
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method for tests.
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- `src/my_deepagent/persistence/checkpointer.py`: `SqliteSaver` →
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`AsyncPostgresSaver`. API is now async (`async with`) and takes a
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connection string; SQLAlchemy URL prefixes (`postgresql+asyncpg://`,
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`postgresql+psycopg://`) are auto-stripped to a plain libpq DSN. New
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`_to_psycopg_dsn` helper covered by 4 unit tests.
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- `src/my_deepagent/persistence/upsert.py` (new): `insert_for(session)` —
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dialect-aware UPSERT helper. Picks `postgresql.insert` or `sqlite.insert`
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based on the bound engine's dialect. Replaces 5 hardcoded `sqlite_insert`
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call sites in `budget.py`, `recovery.py`, and `cli/doctor.py`.
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- `src/my_deepagent/config.py`: `database_url` default switched from
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`sqlite+aiosqlite:///<data_dir>/database.sqlite3` to
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`postgresql+asyncpg://devflow:devflow@localhost:55432/mydeepagent`. The v3
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`devflow` DB is preserved untouched; v4 lives in a fresh `mydeepagent` DB.
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- `src/my_deepagent/persistence/models.py`: `RunRow.__table_args__` partial
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unique index now declares **both** `postgresql_where=` and `sqlite_where=`
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so the index is partial on both dialects.
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- `src/my_deepagent/cli/doctor.py`: check 8 (`disk+db`) is now dialect-aware
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— Postgres path runs `SELECT 1` (pg_isready equivalent: proves
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reachability + auth + DB exists); SQLite path keeps
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`PRAGMA integrity_check`. Doctor docstring updated.
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- `alembic/env.py`: env-aware URL resolution — `MYDEEPAGENT_DATABASE_URL` >
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`DATABASE_URL` > Postgres default. Async driver prefixes
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(`+asyncpg`, `+aiosqlite`) are mapped to the sync equivalents alembic
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needs (`+psycopg`, plain `sqlite`).
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- `alembic/versions/9f2a6c79667e_v0_2_baseline_schema_postgres.py` (new):
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fresh baseline autogenerated against live Postgres. Old SQLite baseline
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`79945fdc2649` + partial-index migration `839f2233e346` deleted.
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- `tests/conftest.py` (new): `pg_db_url` async fixture. Creates a fresh
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Postgres database per test (against docker-compose `devflow-postgres`)
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via the maintenance `postgres` DB; drops on teardown after terminating
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any lingering backends. Used by the E2E suite and the new checkpointer
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tests.
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- `tests/integration/test_checkpointer.py`: rewritten for AsyncPostgresSaver
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(4 pure DSN-converter tests + 3 async context-manager tests).
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- `tests/integration/test_e2e_workflow.py`: switched from `sqlite+aiosqlite`
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tmp_path to `pg_db_url`. Real OpenRouter E2E now exercises the production
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Postgres path end-to-end (~122 s, ~$0.05/run).
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### Migration trigger (per DR-2)
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- The bound is *two concurrent writers* on `runs` / `run_phases` / `llm_calls`.
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Today the CLI is the only writer — but M8-Py (FastAPI) introduces a second
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one, and SQLite WAL allows only a single concurrent writer. Doing the move
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*before* M8-Py lands gives the test surface time to harden.
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- Recovery: previous SQLite database at
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`~/Library/Application Support/my-deepagent/database.sqlite3` (macOS) /
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`$XDG_DATA_HOME/my-deepagent/database.sqlite3` is **not migrated** —
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v0.1.0 was the only release that wrote to it and v0.2 starts a fresh
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history. Set `MYDEEPAGENT_DATABASE_URL=sqlite+aiosqlite:///<path>` to
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read the legacy file if needed.
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### Gates
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- ruff check + ruff format --check + mypy --strict: PASS (102 source files)
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- pytest non-E2E: 576 PASS (5.46 s) — bulk on sqlite tmp_path, new
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checkpointer suite on Postgres `pg_db_url`
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- pytest E2E real OpenRouter: 1 PASS (122.93 s) on Postgres backend
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## [0.1.0] - 2026-05-16
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First tagged milestone of the Python rewrite. The pre-Python-rewrite TypeScript
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monorepo has been removed (commit `0e61b2d`); recovery is available via the
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`pre-python-rewrite` tag at `c9fed71`.
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### Added
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- Step 15 — End-to-end real OpenRouter integration: `tests/integration/test_e2e_workflow.py`
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runs `spec-and-review@1` workflow (spec → review → verify) end-to-end against real
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OpenRouter DeepSeek in ~76s for ~$0.05 per run. `BindingOverride` pins all 3 roles to
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DeepSeek personas to sidestep the langchain-openai + Anthropic-via-OpenRouter
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`tool_calls.args` JSON-string ValidationError (known v0.1.0 limit). New seed personas:
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`openrouter-deepseek-spec-writer@1` (capabilities: spec_write, phase_planning;
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max_cost_per_call_usd=0.01) and `openrouter-deepseek-code-reviewer@1` (capabilities:
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code_review, evidence_check; max_cost_per_call_usd=0.01). Persona count test updated
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to 12. `WorkflowEngine._build_envelope` now inlines the artifact JSON Schema directly
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in the prompt so the LLM sees exact required fields. `WorkflowEngine._record_llm_call`
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fills every NOT NULL `LlmCallRow` column (thread_id, persona_version, role, turn_index,
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cached_tokens, reasoning_tokens, cost_usd_input/output, etc.). `CostMiddleware` now
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probes both `usage_metadata` and `response_metadata.token_usage` (prompt_tokens /
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completion_tokens fallback) to capture OpenAI-compatible streamed responses forwarded
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by OpenRouter.
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- Step 12 — Doctor full 8-check + OpenRouter pricing fetch: `mydeepagent doctor`
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now runs 8 checks (python / uv / git / workspace_root / config+governance /
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openrouter_api_key / openrouter_ping + pricing upsert / disk+sqlite integrity).
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`mydeepagent pricing` lists the cached OpenRouter pricing matrix from the
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persisted `model_pricing` table. `mydeepagent run` preview now reads from the
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persisted `model_pricing` table when populated, falling back to the static seed
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otherwise. 26 new tests (23 unit + 3 integration).
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- Step 11 — Audit log + secret scrubbing: append-only `{state_dir}/audit.jsonl`
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recording every tool call (name/args/duration/error). `AuditToolMiddleware` now
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ships with a built-in JSONL recorder (`file_recorder`), attached automatically in
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`WorkflowEngine` and Interactive REPL. `structlog` configured project-wide via
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`my_deepagent.logging.configure_logging`, with a `_scrub_processor` that redacts
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OpenRouter / Anthropic / OpenAI / LangSmith / GitHub / GitLab API keys plus
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generic Bearer tokens before they reach stderr or JSON sinks. `audit.py` provides
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`append_audit_record` (O_APPEND, 0o600 permissions), `read_audit_records` (with
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optional limit, corrupt-line skip), and `make_audit_recorder` async factory.
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19 new tests (8 audit unit, 9 logging unit, 3 audit-middleware integration).
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- Step 10 — Interactive REPL: `mydeepagent` (no subcommand) launches a prompt_toolkit
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REPL with `--agent` / `--model` overrides, slash commands (`/help`, `/quit`, `/exit`,
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`/agent`, `/model`, `/clear`, `/stats`, `/budget`, `/runs`), file refs
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(`@path/to/file.py` expansion with repo-root containment check), and
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`CostMiddleware`-wired agent calls so spending is metered per interactive session.
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`slash.py` implements `parse_slash` + `SlashRegistry`. `CostMiddleware` gains
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`interactive_session_id` parameter. 21 new tests (10 slash unit, 5 file-ref unit,
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3 CLI integration, 3 updated CLI unit).
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- Step 9 — Crash recovery + concurrency: `sweep_orphan_runs(db)` in
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`my_deepagent.recovery` marks non-terminal runs/phases as failed at app startup so
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active-run uniqueness slots (partial unique index `ux_active_run_repo_base`) are freed;
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`mydeepagent runs list/show/resume` CLI in `my_deepagent.cli.runs` (list with optional
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`--state` filter, show by full UUID or 6+ char prefix, resume stub with exit-2 hint);
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SIGTERM/SIGINT graceful shutdown in `WorkflowEngine` (`install_signal_handlers`,
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`_on_signal`, `_force_cancel_inflight`; 30s grace then cancel in-flight tasks);
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auto-sweep on `mydeepagent run` before any new phase begins. 21 new tests.
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- Step 8 — Budget guardrails: `BudgetTracker` (SQLite WAL ledger via `BudgetLedgerRow`,
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on_hit policy block/warn_continue/prompt, per-run + per-day + per-persona-daily
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scopes) in `my_deepagent.budget`; cost preview before `mydeepagent run` (rich table
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with per-phase est.) via `my_deepagent.monitoring.cost_estimator`;
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`CostMiddleware` integrated with `BudgetTracker` (pre-call assert + post-call record);
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`WorkflowEngine` accepts optional `budget_tracker` and `pricing` kwargs (backward-
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compatible); CLI: `mydeepagent budget` (ledger), `mydeepagent stats --by model|persona|day`,
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`mydeepagent costs` (alias); `--no-preview` flag on `mydeepagent run`.
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28 new tests.
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- Step 7 — Workflow engine: `WorkflowEngine` in `my_deepagent.engine` orchestrates
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phase loop, artifact watcher (write_file/edit_file detection), jsonschema validation
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with one repair retry, approval gate, and final report compose (JSON + Markdown).
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`ArtifactWatcherMiddleware` in `my_deepagent.middleware.artifact_watcher` intercepts
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write_file/edit_file tool calls targeting the expected artifact path.
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`RunEventType` + `run_idempotency_key` in `my_deepagent.run_event` (closed event set,
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deterministic idempotency keys per plan v2.0 §13.1).
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`cli/run.py` exposes `mydeepagent run <workflow.yaml>`.
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`tui/approval.py` prompts the user for approve/reject/request_changes/abort.
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FK-safe persistence: WorkflowTemplateRow and AgentPersonaRow upserted before RunRow
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to satisfy SQLite FK ordering constraints.
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18 new tests: 12 engine unit/integration tests + 6 artifact watcher tests.
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- Step 6 — Distribution: `mydeepagent init/login/logout/keys/doctor` CLI commands;
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platformdirs-based data dirs; OS keyring (macOS Keychain / Linux Secret Service /
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Windows Credential Store) for API keys via `my_deepagent.keys`; first-run
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governance consent in `governance.py`; secret resolution priority
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(config → env → keyring → error) in `my_deepagent.secrets`; i18n catalog
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(ko / en) under `my_deepagent.i18n` controlled by `MYDEEPAGENT_LANG`.
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- persistence/models.py (P0-1): partial unique index `ux_active_run_repo_base` on `runs(repo_path, base_branch) WHERE state NOT IN ('completed','failed','aborted')` — prevents duplicate active runs per repo/branch
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- persistence/models.py (P0-3): FK constraints added to `RunRow.template_id` (RESTRICT), `RunBindingRow.persona_id` (RESTRICT), `InteractiveSessionRow.persona_id` (RESTRICT), `RunEventRow.phase_id` (CASCADE), `ApprovalRequestRow.phase_id` (CASCADE), `ArtifactRow.phase_id` (CASCADE), `ToolCallRow.run_id/phase_id/interactive_session_id` (CASCADE), `LlmCallRow.run_id/phase_id/interactive_session_id` (CASCADE), `PhaseFeedbackRow.run_id/phase_id` (CASCADE)
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- alembic/versions/839f2233e346: new migration adding partial unique index and all FK constraints above; uses SQLite table-rebuild pattern with PRAGMA foreign_keys=OFF/ON guard
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- persistence/checkpointer.py (P0-4): removed `get_checkpointer` (leaking connection helper); only `get_checkpointer_ctx` context manager is now exported
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- tests/integration/test_checkpointer.py: 5 tests for checkpointer ctx lifecycle (file creation, parent dir, connection cleanup, lock-free concurrent use)
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- tests/integration/test_persistence.py: 7 new P0 verification tests (active-run partial index blocks/allows, cascade-delete of phase_feedback+run_phases, RESTRICT on template delete, index exists in sqlite_master)
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- tests/unit/test_session.py: full rewrite to deepagents dataclass API — FilesystemPermission attribute access (.mode/.paths/.operations), build_backend type dispatch (5 cases), _map_operations deduplication (8 cases), _spec_to_permission mapping, updated _subagent_to_dict and _resolve_openrouter_api_key tests; 47 unit tests total
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- tests/integration/test_openrouter_smoke.py: real OpenRouter/DeepSeek smoke test (3 tests, ~$0.001-$0.003/run, max_tokens=50); skipped automatically when no API key is configured; validates ChatOpenAI response, usage_metadata tokens, and deepagents CompiledStateGraph end-to-end
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- pyproject.toml: registered `integration` pytest marker to silence --strict-markers error
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- v0.1.0 scaffolding (Step 0): src/tests/docs trees, ruff/mypy/pre-commit/alembic config
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- Seed assets copied to docs/schemas/ (personas/workflows/artifacts validated)
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- Core module (Step 1): config, enums, errors, hash + unit tests
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- Persona / Workflow / Binding module (Step 2): pydantic schemas, YAML loaders, deterministic auto-select, override, consent store with atomic write
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- Step 1 review patches (P0/P1): exception chain context suppression, classmethod LSP fix, workspace_root realpath canonicalization, config_invalid error mapping
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### Changed
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- deepagents 0.6.1 LocalShellBackend + permissions conflict workaround: removed `permissions` block from all 10 seed personas; `SafetyShellMiddleware` now enforces destructive-command + secret-path policy at the tool layer for local_shell backend agents.
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- `build_agent` automatically prepends `SafetyShellMiddleware` to every agent and skips `permissions` kwarg when `deepagents_backend == "local_shell"`.
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- `SafetyShellMiddleware` extended with secret-path enforcement: `read_file`/`write_file`/`edit_file`/`ls` tool calls are blocked when `file_path`/`path` matches any `DENY_PATH_PATTERNS` glob (wcmatch GLOBSTAR|IGNORECASE|DOTGLOB).
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- All env vars require `MYDEEPAGENT_` prefix (e.g. `MYDEEPAGENT_OPENROUTER_API_KEY`, `MYDEEPAGENT_BUDGET_DAILY_USD`). `.env.example` updated accordingly. This isolates my-deepagent's env namespace from other tools.
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- Persona / Workflow / FilesystemPermission models now store list-valued fields as tuples (deep immutability — prevents post-construction mutation that would invalidate compute_hash()).
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### Known limitations (v0.1.0)
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- `usage_metadata` is sometimes empty for responses forwarded by OpenRouter (deepagents
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wraps the underlying ChatOpenAI response so token counts may not surface). The
|
||
`CostMiddleware` recorder still fires and a `LlmCallRow` row is persisted, but
|
||
`input_tokens` / `output_tokens` may read as 0 — the E2E test treats this as a known
|
||
limit. v0.2 will probe more response shapes (raw chunks / callbacks).
|
||
- Anthropic models via OpenRouter currently fail with a `tool_calls.args` JSON-string
|
||
vs dict ValidationError inside `langchain-openai`. Workaround: pin DeepSeek personas
|
||
via `BindingOverride`. Tracking for v0.2.
|
||
- `mydeepagent runs resume <run_id>` is a stub (exit-2 hint only); workflow replay
|
||
from a half-run state is not yet implemented.
|