Switches the production backing store from SQLite to PostgreSQL 16, per DR-2.
The migration trigger is two concurrent writers on the my-deepagent ORM
tables — which first appears with FastAPI (M8-Py). Doing the cut now keeps
the surface area small while M8-Py is still planning.
Production deps: `asyncpg`, `psycopg[binary]`, `langgraph-checkpoint-postgres`.
Test deps: `aiosqlite` (the bulk of unit + integration tests stay on sqlite
tmp_path for speed; the E2E suite and the new checkpointer tests exercise
the live Postgres path).
Highlights
- `persistence/db.py`: dialect-aware connect listener. SQLite still gets
WAL + busy_timeout=5000 + foreign_keys=ON; Postgres gets `SET TIME ZONE 'UTC'`.
Added `Database.dialect_name` + `drop_schema` (test-only).
- `persistence/checkpointer.py`: SqliteSaver → AsyncPostgresSaver. API is
now async (`async with`) and takes a connection string. SQLAlchemy URL
prefixes (`+asyncpg`, `+psycopg`) are auto-stripped to a plain libpq DSN
(`_to_psycopg_dsn` helper, 4 unit tests).
- `persistence/upsert.py` (new): `insert_for(session)` — dialect-aware UPSERT
helper. Picks `postgresql.insert` or `sqlite.insert` based on the bound
engine. Replaces 5 hardcoded `sqlite_insert` call sites in `budget.py`,
`recovery.py`, `cli/doctor.py`.
- `persistence/models.py`: `RunRow` partial unique index declares both
`postgresql_where=` and `sqlite_where=` for cross-dialect correctness.
- `config.py`: default `database_url` now
`postgresql+asyncpg://devflow:devflow@localhost:55432/mydeepagent`. v3
`devflow` DB preserved untouched; v4 lives in a fresh `mydeepagent` DB.
- `cli/doctor.py` check 8: dialect-aware DB liveness probe. Postgres path
runs `SELECT 1` (pg_isready equivalent); SQLite keeps `PRAGMA integrity_check`.
- `alembic/env.py`: env-aware URL resolution (`MYDEEPAGENT_DATABASE_URL` >
`DATABASE_URL` > default). Async driver prefixes are mapped to the sync
equivalents alembic needs.
- `alembic/versions/9f2a6c79667e_v0_2_baseline_schema_postgres.py` (new):
fresh baseline autogenerated against live Postgres. Old SQLite migrations
(`79945fdc2649`, `839f2233e346`) deleted — v0.2 starts a clean history.
- `tests/conftest.py` (new): `pg_db_url` async fixture creates a fresh DB
per test against docker-compose `devflow-postgres` and drops it on
teardown after terminating lingering backends.
- `tests/integration/test_checkpointer.py`: rewritten for AsyncPostgresSaver
(4 pure DSN-converter unit tests + 3 async context-manager integration tests).
- `tests/integration/test_e2e_workflow.py`: switched to `pg_db_url`. Real
OpenRouter E2E now exercises the production Postgres path end-to-end.
Recovery
- Previous SQLite database at the platformdirs data_dir is NOT auto-migrated;
v0.1.0 was the only release that wrote to it. Set
`MYDEEPAGENT_DATABASE_URL=sqlite+aiosqlite:///<path>` to read it.
- The v3 `devflow` Postgres DB is preserved untouched (separate database
name); to inspect: `psql -h localhost -p 55432 -U devflow -d devflow`.
Gates
- ruff check + ruff format --check + mypy --strict: PASS (102 source files)
- pytest non-E2E: 576 PASS (5.46 s)
- pytest E2E real OpenRouter on Postgres: 1 PASS (122.93 s, ~$0.05/run)
--no-verify: lefthook still TS-only (deleted in 0e61b2d but still queryable
in git history).
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
14 KiB
14 KiB
Changelog
[Unreleased]
Added
- v0.2 PR #1 — Postgres migration: production backing store switched from
SQLite to PostgreSQL 16 ahead of M8-Py (FastAPI) per DR-2.
pyproject.toml:asyncpg>=0.30+psycopg[binary]>=3.2+langgraph-checkpoint-postgres>=2.0.0added to runtime;aiosqlite>=0.20moved to[dependency-groups].dev(test-only);langgraph-checkpoint-sqliteremoved.src/my_deepagent/persistence/db.py: dialect-aware connect listener — SQLite still getsWAL+busy_timeout=5000+foreign_keys=ON, Postgres getsSET TIME ZONE 'UTC'. NewDatabase.dialect_nameproperty +drop_schemamethod for tests.src/my_deepagent/persistence/checkpointer.py:SqliteSaver→AsyncPostgresSaver. API is now async (async with) and takes a connection string; SQLAlchemy URL prefixes (postgresql+asyncpg://,postgresql+psycopg://) are auto-stripped to a plain libpq DSN. New_to_psycopg_dsnhelper covered by 4 unit tests.src/my_deepagent/persistence/upsert.py(new):insert_for(session)— dialect-aware UPSERT helper. Pickspostgresql.insertorsqlite.insertbased on the bound engine's dialect. Replaces 5 hardcodedsqlite_insertcall sites inbudget.py,recovery.py, andcli/doctor.py.src/my_deepagent/config.py:database_urldefault switched fromsqlite+aiosqlite:///<data_dir>/database.sqlite3topostgresql+asyncpg://devflow:devflow@localhost:55432/mydeepagent. The v3devflowDB is preserved untouched; v4 lives in a freshmydeepagentDB.src/my_deepagent/persistence/models.py:RunRow.__table_args__partial unique index now declares bothpostgresql_where=andsqlite_where=so the index is partial on both dialects.src/my_deepagent/cli/doctor.py: check 8 (disk+db) is now dialect-aware — Postgres path runsSELECT 1(pg_isready equivalent: proves reachability + auth + DB exists); SQLite path keepsPRAGMA integrity_check. Doctor docstring updated.alembic/env.py: env-aware URL resolution —MYDEEPAGENT_DATABASE_URL>DATABASE_URL> Postgres default. Async driver prefixes (+asyncpg,+aiosqlite) are mapped to the sync equivalents alembic needs (+psycopg, plainsqlite).alembic/versions/9f2a6c79667e_v0_2_baseline_schema_postgres.py(new): fresh baseline autogenerated against live Postgres. Old SQLite baseline79945fdc2649+ partial-index migration839f2233e346deleted.tests/conftest.py(new):pg_db_urlasync fixture. Creates a fresh Postgres database per test (against docker-composedevflow-postgres) via the maintenancepostgresDB; drops on teardown after terminating any lingering backends. Used by the E2E suite and the new checkpointer tests.tests/integration/test_checkpointer.py: rewritten for AsyncPostgresSaver (4 pure DSN-converter tests + 3 async context-manager tests).tests/integration/test_e2e_workflow.py: switched fromsqlite+aiosqlitetmp_path topg_db_url. Real OpenRouter E2E now exercises the production Postgres path end-to-end (~122 s, ~$0.05/run).
Migration trigger (per DR-2)
- The bound is two concurrent writers on
runs/run_phases/llm_calls. Today the CLI is the only writer — but M8-Py (FastAPI) introduces a second one, and SQLite WAL allows only a single concurrent writer. Doing the move before M8-Py lands gives the test surface time to harden. - Recovery: previous SQLite database at
~/Library/Application Support/my-deepagent/database.sqlite3(macOS) /$XDG_DATA_HOME/my-deepagent/database.sqlite3is not migrated — v0.1.0 was the only release that wrote to it and v0.2 starts a fresh history. SetMYDEEPAGENT_DATABASE_URL=sqlite+aiosqlite:///<path>to read the legacy file if needed.
Gates
- ruff check + ruff format --check + mypy --strict: PASS (102 source files)
- pytest non-E2E: 576 PASS (5.46 s) — bulk on sqlite tmp_path, new
checkpointer suite on Postgres
pg_db_url - pytest E2E real OpenRouter: 1 PASS (122.93 s) on Postgres backend
[0.1.0] - 2026-05-16
First tagged milestone of the Python rewrite. The pre-Python-rewrite TypeScript
monorepo has been removed (commit 0e61b2d); recovery is available via the
pre-python-rewrite tag at c9fed71.
Added
- Step 15 — End-to-end real OpenRouter integration:
tests/integration/test_e2e_workflow.pyrunsspec-and-review@1workflow (spec → review → verify) end-to-end against real OpenRouter DeepSeek in ~76s for ~$0.05 per run.BindingOverridepins all 3 roles to DeepSeek personas to sidestep the langchain-openai + Anthropic-via-OpenRoutertool_calls.argsJSON-string ValidationError (known v0.1.0 limit). New seed personas:openrouter-deepseek-spec-writer@1(capabilities: spec_write, phase_planning; max_cost_per_call_usd=0.01) andopenrouter-deepseek-code-reviewer@1(capabilities: code_review, evidence_check; max_cost_per_call_usd=0.01). Persona count test updated to 12.WorkflowEngine._build_envelopenow inlines the artifact JSON Schema directly in the prompt so the LLM sees exact required fields.WorkflowEngine._record_llm_callfills every NOT NULLLlmCallRowcolumn (thread_id, persona_version, role, turn_index, cached_tokens, reasoning_tokens, cost_usd_input/output, etc.).CostMiddlewarenow probes bothusage_metadataandresponse_metadata.token_usage(prompt_tokens / completion_tokens fallback) to capture OpenAI-compatible streamed responses forwarded by OpenRouter. - Step 12 — Doctor full 8-check + OpenRouter pricing fetch:
mydeepagent doctornow runs 8 checks (python / uv / git / workspace_root / config+governance / openrouter_api_key / openrouter_ping + pricing upsert / disk+sqlite integrity).mydeepagent pricinglists the cached OpenRouter pricing matrix from the persistedmodel_pricingtable.mydeepagent runpreview now reads from the persistedmodel_pricingtable when populated, falling back to the static seed otherwise. 26 new tests (23 unit + 3 integration). - Step 11 — Audit log + secret scrubbing: append-only
{state_dir}/audit.jsonlrecording every tool call (name/args/duration/error).AuditToolMiddlewarenow ships with a built-in JSONL recorder (file_recorder), attached automatically inWorkflowEngineand Interactive REPL.structlogconfigured project-wide viamy_deepagent.logging.configure_logging, with a_scrub_processorthat redacts OpenRouter / Anthropic / OpenAI / LangSmith / GitHub / GitLab API keys plus generic Bearer tokens before they reach stderr or JSON sinks.audit.pyprovidesappend_audit_record(O_APPEND, 0o600 permissions),read_audit_records(with optional limit, corrupt-line skip), andmake_audit_recorderasync factory. 19 new tests (8 audit unit, 9 logging unit, 3 audit-middleware integration). - Step 10 — Interactive REPL:
mydeepagent(no subcommand) launches a prompt_toolkit REPL with--agent/--modeloverrides, slash commands (/help,/quit,/exit,/agent,/model,/clear,/stats,/budget,/runs), file refs (@path/to/file.pyexpansion with repo-root containment check), andCostMiddleware-wired agent calls so spending is metered per interactive session.slash.pyimplementsparse_slash+SlashRegistry.CostMiddlewaregainsinteractive_session_idparameter. 21 new tests (10 slash unit, 5 file-ref unit, 3 CLI integration, 3 updated CLI unit). - Step 9 — Crash recovery + concurrency:
sweep_orphan_runs(db)inmy_deepagent.recoverymarks non-terminal runs/phases as failed at app startup so active-run uniqueness slots (partial unique indexux_active_run_repo_base) are freed;mydeepagent runs list/show/resumeCLI inmy_deepagent.cli.runs(list with optional--statefilter, show by full UUID or 6+ char prefix, resume stub with exit-2 hint); SIGTERM/SIGINT graceful shutdown inWorkflowEngine(install_signal_handlers,_on_signal,_force_cancel_inflight; 30s grace then cancel in-flight tasks); auto-sweep onmydeepagent runbefore any new phase begins. 21 new tests. - Step 8 — Budget guardrails:
BudgetTracker(SQLite WAL ledger viaBudgetLedgerRow, on_hit policy block/warn_continue/prompt, per-run + per-day + per-persona-daily scopes) inmy_deepagent.budget; cost preview beforemydeepagent run(rich table with per-phase est.) viamy_deepagent.monitoring.cost_estimator;CostMiddlewareintegrated withBudgetTracker(pre-call assert + post-call record);WorkflowEngineaccepts optionalbudget_trackerandpricingkwargs (backward- compatible); CLI:mydeepagent budget(ledger),mydeepagent stats --by model|persona|day,mydeepagent costs(alias);--no-previewflag onmydeepagent run. 28 new tests. - Step 7 — Workflow engine:
WorkflowEngineinmy_deepagent.engineorchestrates phase loop, artifact watcher (write_file/edit_file detection), jsonschema validation with one repair retry, approval gate, and final report compose (JSON + Markdown).ArtifactWatcherMiddlewareinmy_deepagent.middleware.artifact_watcherintercepts write_file/edit_file tool calls targeting the expected artifact path.RunEventType+run_idempotency_keyinmy_deepagent.run_event(closed event set, deterministic idempotency keys per plan v2.0 §13.1).cli/run.pyexposesmydeepagent run <workflow.yaml>.tui/approval.pyprompts the user for approve/reject/request_changes/abort. FK-safe persistence: WorkflowTemplateRow and AgentPersonaRow upserted before RunRow to satisfy SQLite FK ordering constraints. 18 new tests: 12 engine unit/integration tests + 6 artifact watcher tests. - Step 6 — Distribution:
mydeepagent init/login/logout/keys/doctorCLI commands; platformdirs-based data dirs; OS keyring (macOS Keychain / Linux Secret Service / Windows Credential Store) for API keys viamy_deepagent.keys; first-run governance consent ingovernance.py; secret resolution priority (config → env → keyring → error) inmy_deepagent.secrets; i18n catalog (ko / en) undermy_deepagent.i18ncontrolled byMYDEEPAGENT_LANG. - persistence/models.py (P0-1): partial unique index
ux_active_run_repo_baseonruns(repo_path, base_branch) WHERE state NOT IN ('completed','failed','aborted')— prevents duplicate active runs per repo/branch - persistence/models.py (P0-3): FK constraints added to
RunRow.template_id(RESTRICT),RunBindingRow.persona_id(RESTRICT),InteractiveSessionRow.persona_id(RESTRICT),RunEventRow.phase_id(CASCADE),ApprovalRequestRow.phase_id(CASCADE),ArtifactRow.phase_id(CASCADE),ToolCallRow.run_id/phase_id/interactive_session_id(CASCADE),LlmCallRow.run_id/phase_id/interactive_session_id(CASCADE),PhaseFeedbackRow.run_id/phase_id(CASCADE) - alembic/versions/839f2233e346: new migration adding partial unique index and all FK constraints above; uses SQLite table-rebuild pattern with PRAGMA foreign_keys=OFF/ON guard
- persistence/checkpointer.py (P0-4): removed
get_checkpointer(leaking connection helper); onlyget_checkpointer_ctxcontext manager is now exported - tests/integration/test_checkpointer.py: 5 tests for checkpointer ctx lifecycle (file creation, parent dir, connection cleanup, lock-free concurrent use)
- tests/integration/test_persistence.py: 7 new P0 verification tests (active-run partial index blocks/allows, cascade-delete of phase_feedback+run_phases, RESTRICT on template delete, index exists in sqlite_master)
- tests/unit/test_session.py: full rewrite to deepagents dataclass API — FilesystemPermission attribute access (.mode/.paths/.operations), build_backend type dispatch (5 cases), _map_operations deduplication (8 cases), _spec_to_permission mapping, updated _subagent_to_dict and _resolve_openrouter_api_key tests; 47 unit tests total
- tests/integration/test_openrouter_smoke.py: real OpenRouter/DeepSeek smoke test (3 tests, ~$0.001-$0.003/run, max_tokens=50); skipped automatically when no API key is configured; validates ChatOpenAI response, usage_metadata tokens, and deepagents CompiledStateGraph end-to-end
- pyproject.toml: registered
integrationpytest marker to silence --strict-markers error - v0.1.0 scaffolding (Step 0): src/tests/docs trees, ruff/mypy/pre-commit/alembic config
- Seed assets copied to docs/schemas/ (personas/workflows/artifacts validated)
- Core module (Step 1): config, enums, errors, hash + unit tests
- Persona / Workflow / Binding module (Step 2): pydantic schemas, YAML loaders, deterministic auto-select, override, consent store with atomic write
- Step 1 review patches (P0/P1): exception chain context suppression, classmethod LSP fix, workspace_root realpath canonicalization, config_invalid error mapping
Changed
- deepagents 0.6.1 LocalShellBackend + permissions conflict workaround: removed
permissionsblock from all 10 seed personas;SafetyShellMiddlewarenow enforces destructive-command + secret-path policy at the tool layer for local_shell backend agents. build_agentautomatically prependsSafetyShellMiddlewareto every agent and skipspermissionskwarg whendeepagents_backend == "local_shell".SafetyShellMiddlewareextended with secret-path enforcement:read_file/write_file/edit_file/lstool calls are blocked whenfile_path/pathmatches anyDENY_PATH_PATTERNSglob (wcmatch GLOBSTAR|IGNORECASE|DOTGLOB).- All env vars require
MYDEEPAGENT_prefix (e.g.MYDEEPAGENT_OPENROUTER_API_KEY,MYDEEPAGENT_BUDGET_DAILY_USD)..env.exampleupdated accordingly. This isolates my-deepagent's env namespace from other tools. - Persona / Workflow / FilesystemPermission models now store list-valued fields as tuples (deep immutability — prevents post-construction mutation that would invalidate compute_hash()).
Known limitations (v0.1.0)
usage_metadatais sometimes empty for responses forwarded by OpenRouter (deepagents wraps the underlying ChatOpenAI response so token counts may not surface). TheCostMiddlewarerecorder still fires and aLlmCallRowrow is persisted, butinput_tokens/output_tokensmay read as 0 — the E2E test treats this as a known limit. v0.2 will probe more response shapes (raw chunks / callbacks).- Anthropic models via OpenRouter currently fail with a
tool_calls.argsJSON-string vs dict ValidationError insidelangchain-openai. Workaround: pin DeepSeek personas viaBindingOverride. Tracking for v0.2. mydeepagent runs resume <run_id>is a stub (exit-2 hint only); workflow replay from a half-run state is not yet implemented.